Joel L. SachsAssistant Professor of Biology
Symbiotic bacteria are a key yet poorly understood facet of our natural world. Yet humans and our food sources often depend on bacterial cooperation for health and fitness. Current research is beginning to unravel the molecular and selective basis of bacterial cooperation. In the process we are discovering that beneficial infections are often evolutionarily unstable and more dynamic than expected. In the Sachs Lab we investigate the forces that shape bacterial cooperation with hosts as well as the origins and evolution of harmful strains. Our current focus is on rhizobial bacteria that live in soils throughout the world and nodulate the roots of many legume hosts. Projects in the Sachs Lab often utilize a wide range of techniques to answer basic questions. These include field collections of wild bacteria, experimental infections and experimental evolution, whole genome sequencing and phylogenetic analysis. Below are several broad research themes that we are currently investigating:
Evolutionary genomics and the origins of symbiosis
The advent of next-gen and whole-genome sequencing is allowing unforeseen advances in evolutionary biology. For the study of symbioses in particular, these approaches are allowing biologists to begin to resolve the genetic mechanisms that drive the origins, maintenance and breakdown of symbiotic interactions. We use genomic data to test evolutionary genetic hypotheses about the different trajectories of bacterial mutualists and pathogens, to reconstruct extremely well resolved phylogenies and to examine the genomic changes that occur in during evolutionary transitions in host association.
The origins of uncooperative symbionts
Rhizobia are bacteria that fix nitrogen in legume roots in exchange for photosynthates from their hosts. However, non-beneficial rhizobia are widespread, including non-fixing strains that appear to be cheaters and non-nodulating strains that fail to infect hosts. Recent research has shown that legumes can punish some uncooperative rhizobia and substantially reduce their fitness, but these sanctions must not be universally effective. Important questions about uncooperative rhizobia remain unresolved. (i) Is it adaptive for rhizobia to be uncooperative with hosts? (ii) Do uncooperative rhizobia evolve from cooperative ancestors? (iii) What are the mechanisms of rhizobial exploitation? We are using experimental approaches as well as phylogenetic analyses to address these key gaps in our knowledge.
Host control over uncooperative symbionts
Host control mechanisms are thought to be critical for selecting against cheater mutants in symbiont populations. Some of our recent research has tested a legume host's ability to constrain the infection and proliferation of a native occurring rhizobial cheater (see below). Lotus strigosus hosts were experimentally inoculated with pairs of Bradyrhizobium strains that naturally vary in symbiotic benefit, including a cheater symbiont strain that proliferates in the roots of singly-infected hosts yet provides zero growth benefits. Within coinfected hosts, the cheater exhibited lower infection rates than competing beneficial strains and grew to smaller population sizes within those nodules. In vitro assays revealed that infection-rate differences among competing strains were not due to variation in rhizobial growth rate or inter-strain toxicity. These results can explain how a rapidly growing cheater symbiont -- that exhibits a massive fitness advantage in single infections -- can be prevented from sweeping through a beneficial population of symbionts. We are now testing how these control mechanisms evolve and how they are perturbed by ecological changes such as anthropogenic nitrogen deposition.
Dr. Sachs participates in the Ecology and Evolutionary Biology tracks of the Evolution, Ecology and Organismal Biology graduate program (EEOB), as well as the graduate programs in Microbiology (Micro), Genetics, Genomics & Bioinformatics (GGB) and Cell, Molecular, and Developmental Biology.
Selected publications:(PDFs available at Sachs Lab Website)
- Sachs, J. L., Russell, J. E. and Hollowell, A. C. 2011. Evolutionary instability of symbiotic function in Bradyrhizobium. PLoS One 6:11:e26370.
- Sachs, J. L., Skophammer, R.G., and Regus, J.U. 2011. Evolutionary transitions in bacterial symbiosis. Proceedings of the National Academy of Sciences USA 108:10800-10807.
- Sachs, J. L., Essenberg, C. and Turcotte, M. M. 2011. New paradigms for the evolution of beneficial infections. Trends in Ecology and Evolution 26: 202-209.
- Sachs, J. L., Russell, J. E., Lii, Y. E., Black, K. C., Lopez, G., and Patil, A. S. 2010. Host control over infection and proliferation of a cheater symbiont. Journal of Evolutionary Biology 23:1919-1927.
- Sachs, J. L., Ehinger, E. O., & Simms, E. L. 2010. Origins of cheating and loss of symbiosis in wild Bradyrhizobium. Journal of Evolutionary Biology 23:1075-1089.
- Medina, M. and Sachs, J. L. 2010. Symbiont genomics; Our new tangled bank. Genomics 95:129-137.
- Sachs, J. L., Kembel, S.W., Lau, A.H., and Simms, E.L. 2009. In situ phylogenetic structure and diversity of wild Bradyrhizobium communities. Applied and Environmental Microbiology 75: 4727-4735.
- Sachs, J. L., and Simms, E.L. 2008. The origins of uncooperative rhizobia. Oikos 117:961-966.
- Sachs, J. L. and Bull, J.J. 2005. Experimental evolution of conflict mediation between genomes Proceedings of the National Academy of Sciences 102:390-395
- Sachs, J. L., Mueller, U. G., Wilcox, T. P., and Bull, J. J. 2004. The Evolution of Cooperation, Quarterly Review of Biology 79:135-160.